Digital Resources

Our developed databases, web servers, mobile applications, and software packages

Resources by Type

Databases Developed

AVR-AgDb: Antiviral Agricultural Database

Access Database

BanSatDb: Banana Microsatellite Database

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BgDb: Bitter Gourd Resource Database

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Black Pepper Genome Database

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BlackP2MSATdb: Black Pepper Polymorphic Microsatellite Database

Access Database

Bp2SSRdb: Black pepper polymorphic SSR database

Access Database

BPCNVDb: Black Pepper CNV Database

Access Database

BPDRTDb: Black Pepper Drought Transcriptome Database

Access Database

BPepAMPdb: Whole genome based BlackPepper antimicrobial peptides database

Access Database

BPncRDB: Black pepper non-coding RNA database

Access Database

BpVarDB: Black pepper variants database

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BrassicaSatDb: Brassica Microsatellite Database

Access Database

BSCM2TDb: Buffalo Subclinical Mastitis Methylome-Transcriptome Database

Access Database

BtChiLCVDb: Bemisia tabaci Asia II 1 transcriptome database in response to chilli leaf curl virus

Access Database

BUF-QTL: Buffalo QTL Database

Access Database

BufAMPdb: a database for buffalo species specific AMPs and non-AMPs

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BuffSatDb: Buffalo Microsatellite Database

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CastDb: Castor Transcriptome Database

Access Database

CnTDB: Coconut Transcriptome Database

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Comprehensive Mango Pangenome Resource

Access Database

CsDTDb:Transcriptome based Cucumis sativus Database for Drought

Access Database

CsExSLDb: Transcriptome based Cucumis sativus Extended Shelf Life Database

Access Database

CsHTDb:Transcriptome based Cucumis sativus Database for Heat

Access Database

CyExpDB-Cyprinidae Expression Database

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CyPanBase: The Cyprinus carpio Pan-genome Database

Access Database

CypriSSR: A Curated Genome-Wide Microsatellite Database for Cyprinidae Species

Access Database

EqCNVdb: Equine CNVs database (EqCNVdb)

Access Database

FEAtl: A Comprehensive web-based Expression Atlas for functional genomics in Tropical and Subtropical Fruit Crops

Access Database

FungSatDb: Microsatellite Platform for Fungal Species

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GoSatDb: Goat Microstellite Database

Access Database

Levidb: Genomics of virus in legume crops

Access Database

LrSATDb: A transcriptome database of seasonality associated genes in carp fish, Labeo rohita (rohu)

Access Database

Magur Microsatellite Database

Access Database

Mango Pangenome Resource

Access Database

MgSatDB-Marigold Microsatellite Marker database

Access Database

MiSNPDB: Mango SNP Database

Access Database

OGR: The Onion Genomic Resources

Access Database

OkraSatDb: Okra SSR Database

Access Database

ParkRoxTDB: Tree Bean (Parkia roxburghii) Transcriptome Database

http://backlin.cabgrid.res.in/parkroxtdb/

Access Database

PIPEMicroDb: Pigeonpea Microsatellite Database

Access Database

PlantSSRDb: Unifying easy FDRs and SSR-FDMs Database

https://plantssr.abrl.in/

Access Database

PMDTDB: Pearl Millet Drought Transcriptome Database

Access Database

RoniSatDb:Rohu Microsatellite Database

Access Database

SBMDB: Sugarbeet Microsatellite Database

Access Database

SmTCRD: Transcriptome based Chirkey Virus Database in Small Cardamom

Access Database

SmTMVD: Transcriptome based Mosaic Virus Database

Access Database

STDbCr: Soybean Transcriptome Database for Charcoal rot

Access Database

TaSSRDb: Triticum aestivum SSR Database

Access Database

TiGeR: Tilletia indica genomic resource

Access Database

TomSatDb: Tomato Microsatellite Database

Access Database

TpGBNVDb: Thrips palmi transcriptome database in response to groundnut bud necrosis virus

Access Database

TSTFruMiDB: Tropical-Subtropical-Temperate Fruits Microsatellite Database

Access Database

VigSatDb: Vigna sp. Insilico and validated microsatellite database

Access Database

VmTDB: Vigna mungo Transcriptome Database

Access Database

WBMSTDb: Water Buffalo Mastitis Database

Access Database

WDRoTDB: Wheat Drought Transcriptome Database

Access Database

Web Servers Developed

Antimicrobial Prediction Server for Cattle

Visit Server

Antimicrobial Prediction Server for Fish

Visit Server

BIS-Cattle: Breed Identification Server for Cattle

Visit Server

BIS-Chicken: Breed Identification Server for Chicken

Visit Server

BIS-Goat: Breed Identification Server for Goat

Visit Server

BPepAMP: Black Pepper Antimicrobial Peptides Prediction Server

Visit Server

BufAMPpred: a deep learning-based AMP prediction server

Visit Server

CNVPred: Deep Learning based CNV Prediction Tool

Visit Server

CoreDECAP: Core Development Evaluation Comparative Analysis Platform

Visit Server

CRISPR-Gates: an online resource for CRISPR-Cas tools

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DeepAMP-Antimicrobial Peptides (AMPs) Prediction

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DeepAProt: Abiotic stress protein classification tool using Deep Learning in cereal

Visit Server

GOMI: Goat Microsatellite Webserver for prediction of Indian Goat Breeds

Visit Server

HBPred: Microsatellite based Horse Breed Prediction

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HEssRNA-Shiny: Heritability -based Estimation of Sample Size for RNA-seq

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LncSubLoc: LncRNA Sub-cellular Localization Prediction Tool

Visit Server

LncSubLoc: LncRNA Sub-cellular Localization Prediction Tool

Visit Server

MLDeCNV: A machine-learning approach for accurate detection of copy number variants from whole genome sequencing

http://vps.abrl.in:5004

Visit Server

Motif Search: Motif Identification and Its Frequency Analysis

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MultiEdit PTG Designer 1.0

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PolyMorphPredict: A web-based tool for discovery of polymorphic microsatellite DNA markers from whole genome and transcriptome data

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SIReDAM: Systematic Information Resources for Dairy Animal Management

Visit Server

TamiRPred: Putative miRNA Discovery Tool in Wheat (Triticum aestivum L.)

Visit Server

VISTa: Variety Identification System for Triticum aestivum (Wheat)

Visit Server

Mobile Applications

BPepAMPapp: Black Pepper Antimicrobial Peptides Prediction Server

Download App

BufAMPpredapp: Mobile app for deep learning-based AMP prediction server

Download App

CucuAPP: A Mobile Application for Cucumber cultivation

Download App

DeepAProt App: Mobile App for Abiotic stress protein classification tool using Deep Learning in cereal

Download App

IndiChickApp: Phenotypic signatures of Indian native chickens

Download App

Mare-USG App: Application of Ultrasonograpgy in mare Reproduction

Download App

Rabies Aid: Comprehensive Care Guide

Download App

VISTa-Mobile App

Download App

Software Packages (GitHub/R)

BufAMPpredapp: Mobile app for deep learning-based AMP prediction server

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CoreDECAP: A Streamlined Framework for Rapid Extraction and Comparative Analysis of Core Samples

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DeepAProt App: Mobile App for Abiotic stress protein classification tool using Deep Learning in cereal

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DeepAProt App: Mobile App for Abiotic stress protein classification tool using Deep Learning in cereal

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R-Package: DNAmotif: DNA Sequence Motifs

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R-Package: HEssRNA, Version: 1.0.1 Title: Heritability-Based Estimation of Sample Size for RNA-Seq Data

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